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Parallel computing for bioinformatics and computational biology : models, enabling technologies, and case studies / edited by Albert Y. Zomaya.

Contributor(s): Zomaya, Albert Y [(ed.)].
Series: Wiley series on parallel and distributed computing. Publisher: Hoboken, N.J. : Wiley-Interscience, c2006Description: xxix, 782 p. : ill. ; 25 cm.ISBN: 0471718483 (hbk.); 9780471718482.Subject(s): Bioinformatics | Computational biology | Parallel processing (Electronic computers)DDC classification: 572.80285
Contents:
Preface. - Contributors. - Acknowledgments. - Pt. 1. Algorithms and Models. 1. Parallel and Evolutionary Approaches to Computational Biology / Nouhad Rizk. 2. Parallel Monte Carlo Simulation of HIV Molecular Evolution in Response to Immune Surveillance / Jack da Silva. - 3. Differential Evolutionary Algorithms for in vivo dynamic analysis of glycolysis and pentose phosphate pathway in Escherichia coli. - 4. Compute Intensive Simulations for Cellular Models / Kevin Burrage. - 5. Parallel Computation in Simulating Diffusion and Deformation in Human Brain / Jun Zhang. - Pt. II. Sequence analysis and microarrays. 6. Computational Molecular Biology / Azzedine Boukerche. 7. Special-Purpose Computing for Biological Sequence Analysis Heiko Schroder. 8. Multiple Sequence Alignment in Parallel on a Cluster of Workstations / Amitava datta. 9. Searching Sequence Databases using High Performance BLASTs / Chau-Wen Tseng. - 10. Parallel Implementations of Local Sequence Alignment: Hardware and Software / Vipin Chaudhary. 11. Parallel Computing in the Analysis of Gene Expression Relationships / Martino, Robert. 12. Assembling DNA Fragments with a Distributed Genetic Algorithm. 13. A Cooperative Genetic Algorithm for Knowledge Discovery in MicroArray Experiments / El-Ghazali Talbi. Pt. III. Phylogenetics. 14. Parallel and Distributed Computation of Large / Phylogenetic Trees / Alexandros P. Stamatakis. 15. Phylogenetic Parameter Estimation on COWs Heiko Schmidt. 16. High-Performance Phylogeny Reconstruction Under Maximum Parsimony / Tiffani Williams. 17. Protein Folding with the Parallel Replica Exchange Molecular Dynamics Method / Ruhong Zhou. 18. High Performance Alignment Methods for Protein Threading / Nicola Yanev. 19. Parallel evolution computations in discerning protein structures. - Pt. V. Plantforms and enablling technologies. 20. A brief overview of grid activites for bioinformatics and health informations. 21. Parallel Algorithms for Bioinformatics / Shahid H. Bokhari. 22. Cluster and Grid Infrastructure for Computational Chemistry and Biochemistry. 23. Distributed Workflows in Bioinformatics/ Arun Krishnan. 24. Molecular Structure Determination on a Computational and Data Grid / Russ Miller. 25. GIPSY: A Problem Solving Environment for Bioinformatics applications / Rajendra Joshi. 26. TaskSpaces: A Software Framework for Parallel Bioinformatics on Computational Grids / Hans De Sterck. 27. The Organic Grid: self-organizing computation on desktop Grids. 28. FPGA Computing in modern bioinformatics / Simmler Harald. 29. Virtual Microscopy: Distributed Image Storage, Retrieval, Analysis, and Visualization. T. Pan. - Index.
Item type Current location Call number Copy number Status Notes Date due Barcode Remark
Main Collection TU External Storage-LCS
572.80285 PAR (Browse shelf) 1 Available SBSxx,36100,03,GR 5000079419 Please fill up online form at https://taylorslibrary.taylors.edu.my/services/external_storage1

Includes bibliographical references and index.

Preface. - Contributors. - Acknowledgments. - Pt. 1. Algorithms and Models. 1. Parallel and Evolutionary Approaches to Computational Biology / Nouhad Rizk. 2. Parallel Monte Carlo Simulation of HIV Molecular Evolution in Response to Immune Surveillance / Jack da Silva. - 3. Differential Evolutionary Algorithms for in vivo dynamic analysis of glycolysis and pentose phosphate pathway in Escherichia coli. - 4. Compute Intensive Simulations for Cellular Models / Kevin Burrage. - 5. Parallel Computation in Simulating Diffusion and Deformation in Human Brain / Jun Zhang. - Pt. II. Sequence analysis and microarrays. 6. Computational Molecular Biology / Azzedine Boukerche. 7. Special-Purpose Computing for Biological Sequence Analysis Heiko Schroder. 8. Multiple Sequence Alignment in Parallel on a Cluster of Workstations / Amitava datta. 9. Searching Sequence Databases using High Performance BLASTs / Chau-Wen Tseng. - 10. Parallel Implementations of Local Sequence Alignment: Hardware and Software / Vipin Chaudhary. 11. Parallel Computing in the Analysis of Gene Expression Relationships / Martino, Robert. 12. Assembling DNA Fragments with a Distributed Genetic Algorithm. 13. A Cooperative Genetic Algorithm for Knowledge Discovery in MicroArray Experiments / El-Ghazali Talbi. Pt. III. Phylogenetics. 14. Parallel and Distributed Computation of Large / Phylogenetic Trees / Alexandros P. Stamatakis. 15. Phylogenetic Parameter Estimation on COWs Heiko Schmidt. 16. High-Performance Phylogeny Reconstruction Under Maximum Parsimony / Tiffani Williams. 17. Protein Folding with the Parallel Replica Exchange Molecular Dynamics Method / Ruhong Zhou. 18. High Performance Alignment Methods for Protein Threading / Nicola Yanev. 19. Parallel evolution computations in discerning protein structures. - Pt. V. Plantforms and enablling technologies. 20. A brief overview of grid activites for bioinformatics and health informations. 21. Parallel Algorithms for Bioinformatics / Shahid H. Bokhari. 22. Cluster and Grid Infrastructure for Computational Chemistry and Biochemistry. 23. Distributed Workflows in Bioinformatics/ Arun Krishnan. 24. Molecular Structure Determination on a Computational and Data Grid / Russ Miller. 25. GIPSY: A Problem Solving Environment for Bioinformatics applications / Rajendra Joshi. 26. TaskSpaces: A Software Framework for Parallel Bioinformatics on Computational Grids / Hans De Sterck. 27. The Organic Grid: self-organizing computation on desktop Grids. 28. FPGA Computing in modern bioinformatics / Simmler Harald. 29. Virtual Microscopy: Distributed Image Storage, Retrieval, Analysis, and Visualization. T. Pan. - Index.